Volume 9 Supplement 1

Seventeenth Annual Computational Neuroscience Meeting: CNS*2008

Meeting abstracts

Edited by William R Holmes

Publication of this supplement was sponsored by Royal Society Publishing, Neuralynx, Springer, MIT Press and National Bernstein Network for Computational Neuroscience

Seventeenth Annual Computational Neuroscience Meeting: CNS*2008. Go to conference site.

Portland, OR, USA19-24 July 2008

Concatenated PDF 9S1

Page 3 of 4

Theoretical derivation of EMOTION-II model for happy and unhappy emotions

Authors: David Tam

Citation: BMC Neuroscience 2008 9(Suppl 1):P80

Content type: Poster presentation Published on: 11 July 2008
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Improved automatic midline tracing of neurites with Neuromantic

Authors: Darren R Myatt and Slawomir J Nasuto

Citation: BMC Neuroscience 2008 9(Suppl 1):P81

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Database analysis and visualization of simulated and recorded electrophysiological data with PANDORA's Toolbox in Matlab

Authors: Cengiz Günay and Dieter Jaeger

Citation: BMC Neuroscience 2008 9(Suppl 1):P82

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A general method for creating realistic reduced compartmental models from electrophysiological traces

Authors: Eric B Hendrickson, Jeremy R Edgerton and Dieter Jaeger

Citation: BMC Neuroscience 2008 9(Suppl 1):P83

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Using Neurofitter to fit a Purkinje cell model to experimental data

Authors: Werner Van Geit and Erik De Schutter

Citation: BMC Neuroscience 2008 9(Suppl 1):P84

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Reaction-diffusion in complex 3D geometries: mesh construction and stochastic simulation with STEPS

Authors: Stefan Wils and Erik De Schutter

Citation: BMC Neuroscience 2008 9(Suppl 1):P85

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Modeling stochastic calcium dynamics in the dendritic spines: a hybrid algorithm

Authors: Georgios Kalantzis, Yoshihisa Kubota and Harel Z Shouval

Citation: BMC Neuroscience 2008 9(Suppl 1):P86

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The role of the Neurospaces project browser in the GENESIS 3 software federation: Design and targets

Authors: Hugo Cornelis, Allan D Coop and James M Bower

Citation: BMC Neuroscience 2008 9(Suppl 1):P87

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The CBI architecture for computational simulation of realistic neurons and circuits in the GENESIS 3 software federation

Authors: Hugo Cornelis, Michael Edwards, Allan D Coop and James M Bower

Citation: BMC Neuroscience 2008 9(Suppl 1):P88

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A new software center for the neuroinformatics community

Authors: Raphael Ritz, Jeanette Hellgren Kotaleski, Per Strandberg, Anders Larsson, Ylva Lillberg, Elli Chatzopoulou, Pontus Holm, Mikael Naeslund, Hui Wang and Jan G Bjaalie

Citation: BMC Neuroscience 2008 9(Suppl 1):P89

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Genetic algorithm modification to speed up parameter fitting for a multicompartment neuron model

Authors: Ruben A Tikidji-Hamburyan

Citation: BMC Neuroscience 2008 9(Suppl 1):P90

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NeuroCAD – the modular simulation environment for effective biologically plausible neuromodeling

Authors: Ruben A Tikidji-Hamburyan and Sergey N Markin

Citation: BMC Neuroscience 2008 9(Suppl 1):P91

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Brian: a simulator for spiking neural networks in Python

Authors: Dan Goodman and Romain Brette

Citation: BMC Neuroscience 2008 9(Suppl 1):P92

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A general biological simulator: the multiscale object oriented simulation environment, MOOSE

Authors: Subhasis Ray, Raamesh Deshpande, Niraj Dudani and Upinder S Bhalla

Citation: BMC Neuroscience 2008 9(Suppl 1):P93

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Spike overlap resolution of electrode and tetrode data from primary visual cortex

Authors: Yasamin Mokri and Shih-Cheng Yen

Citation: BMC Neuroscience 2008 9(Suppl 1):P94

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Axon guidance simulation: a multi-agent approach

Authors: Rui P Costa and Luís Macedo

Citation: BMC Neuroscience 2008 9(Suppl 1):P95

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Modeling the development of maps of complex cells

Authors: Jan Antolik and James A Bednar

Citation: BMC Neuroscience 2008 9(Suppl 1):P96

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A mechanism for temporal sequence learning and recognition in neural systems

Authors: Sean Byrnes, Anthony N Burkitt, Hamish Meffin, Chris Trengove and David B Grayden

Citation: BMC Neuroscience 2008 9(Suppl 1):P97

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Role of plasticity in coincidence detection in the avian auditory brainstem

Authors: Lakshmi Chandrasekaran and Amitabha Bose

Citation: BMC Neuroscience 2008 9(Suppl 1):P98

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The effect of Hebbian plasticity on the attractors of a dynamical system

Authors: Junmei Zhu

Citation: BMC Neuroscience 2008 9(Suppl 1):P99

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Synaptic symmetry breaking by spike timing dependent synaptic plasticity

Authors: Chang-Woo Shin and Seunghwan Kim

Citation: BMC Neuroscience 2008 9(Suppl 1):P100

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Can calcium ion contribute to morphological plasticity of a spine?

Authors: Keiji Nozawa and Kazuhisa Ichikawa

Citation: BMC Neuroscience 2008 9(Suppl 1):P101

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Translational switch for long term maintenance of synaptic plasticity

Authors: Naveed Aslam, Yoshi Kubota and Harel Z Shouval

Citation: BMC Neuroscience 2008 9(Suppl 1):P102

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Spatiotemporal molecular dynamics and synaptic plasticity

Authors: Georgios Kalantzis and Harel Z Shouval

Citation: BMC Neuroscience 2008 9(Suppl 1):P103

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Modeling structural plasticity in dendrites with multiple spine types

Authors: Steven Baer, Sharon Crook and Michael McCamy

Citation: BMC Neuroscience 2008 9(Suppl 1):P104

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GABAergic control of backpropagating action potentials in striatal medium spiny neurons

Authors: Johannes Hjorth, Misha Zilberter, Rodrigo F Oliveira, Kim T Blackwell and Jeanette Hellgren Kotaleski

Citation: BMC Neuroscience 2008 9(Suppl 1):P105

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Cellular Dynamic Simulator: an event driven molecular simulation environment

Authors: Michael J Byrne, M Neal Waxham and Yoshihisa Kubota

Citation: BMC Neuroscience 2008 9(Suppl 1):P106

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Results from a novel Cellular Dynamics Simulator reveal a quantitative mechanism for Ca²⁺-CaM activation in dendritic spines

Authors: Yoshihisa Kubota, Michael J Byrne and M Neal Waxham

Citation: BMC Neuroscience 2008 9(Suppl 1):P107

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Neurogranin provides a kinetic proof reading mechanism for decoding Ca²⁺signals that may govern the induction of synaptic plasticity

Authors: Yoshihisa Kubota and M Neal Waxham

Citation: BMC Neuroscience 2008 9(Suppl 1):P108

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A computational model of dopamine and tyramine interactions in striatal storage vesicles

Authors: Lane J Wallace and Laura E Connell

Citation: BMC Neuroscience 2008 9(Suppl 1):P109

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Modeling the GABA and ephaptic feedback mechanisms in cat outer retina

Authors: Shaojie Chang, Steven M Baer, Sharon M Crook, Carl L Gardner and Christian Ringhofer

Citation: BMC Neuroscience 2008 9(Suppl 1):P110

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A hierarchical predictive coding model of visual processing

Authors: Boris Vladimirskiy, Walter Senn and Robert Urbanczik

Citation: BMC Neuroscience 2008 9(Suppl 1):P111

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Simulating mirror-neuron responses using a neural model for visual action recognition

Authors: Falk Fleischer, Antonino Casile and Martin A Giese

Citation: BMC Neuroscience 2008 9(Suppl 1):P112

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Evaluating feedforward spiking neuron networks using a novel decoding strategy

Authors: Nathan D VanderKraats and Arunava Banerjee

Citation: BMC Neuroscience 2008 9(Suppl 1):P113

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Adaptation in the anuran auditory system contributes to nonlinear response properties of peripheral and midlevel neurons

Authors: Janine M Wotton, Michael J Ferragamo and Katie L Halvorson

Citation: BMC Neuroscience 2008 9(Suppl 1):P114

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How gamma-band oscillatory activity participates in encoding of naturalistic stimuli in random networks of excitatory and inhibitory neurons

Authors: Alberto Mazzoni, Nicolas Brunel and Stefano Panzeri

Citation: BMC Neuroscience 2008 9(Suppl 1):P115

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Independence of space-based and feature-based attention in the determination of figure direction

Authors: Nobuhiko Wagatsuma, Ryohei Shimizu and Ko Sakai

Citation: BMC Neuroscience 2008 9(Suppl 1):P116

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Optimal sigmoidal tuning curves for intensity encoding sensory neurons with quasi-Poisson variability

Authors: Mark D McDonnell and Nigel G Stocks

Citation: BMC Neuroscience 2008 9(Suppl 1):P117

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Computing linear approximations to nonlinear neuronal responses

Authors: Melinda E Koelling and Duane Q Nykamp

Citation: BMC Neuroscience 2008 9(Suppl 1):P118

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Amplitude modulation discrimination in a model of the electrically stimulated auditory nerve

Authors: Joshua H Goldwyn and Eric Shea-Brown

Citation: BMC Neuroscience 2008 9(Suppl 1):P119

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Effects of passive dendritic properties on the dynamics of an oscillating neuron

Authors: Michael A Schwemmer and Timothy J Lewis

Citation: BMC Neuroscience 2008 9(Suppl 1):P120

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What you show is what you get: sampling biases in determining biological sensory function

Authors: Alexander G Dimitrov

Citation: BMC Neuroscience 2008 9(Suppl 1):P121

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Spike sorting should be biased for optimal neural control prostheses

Authors: Ilan N Goodman and Don H Johnson

Citation: BMC Neuroscience 2008 9(Suppl 1):P122

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Fuzzy interval representation of olfactory stimulus concentration in an olfactory glomerulus model

Authors: Malin Sandström, Thomas Proschinger and Anders Lansner

Citation: BMC Neuroscience 2008 9(Suppl 1):P123

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Computing a generative model for neural codes

Authors: Carlos M Herrera Jr, Curtis T Luce, Joe Song and Patricia M Di Lorenzo

Citation: BMC Neuroscience 2008 9(Suppl 1):P124

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Responses of primary visual cortical neurons to natural movies in anesthetized cat

Authors: Shih-Cheng Yen, Jonathan Baker, Jean-Philippe Lachaux and Charles M Gray

Citation: BMC Neuroscience 2008 9(Suppl 1):P125

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Modeling the transformation from LGN to V1 color-opponent receptive fields

Authors: Sarah M Maynard, Bevil R Conway and Mark S Goldman

Citation: BMC Neuroscience 2008 9(Suppl 1):P126

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Modeling spike-count dependence structures with multivariate Poisson distributions

Authors: Arno Onken and Klaus Obermayer

Citation: BMC Neuroscience 2008 9(Suppl 1):P127

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Multidimensional patterns of neuronal activity: how do we see them?

Authors: Ovidiu F Jurjut, Danko Nikolić, Wolf Singer, Dirk Metzler and Raul C Mureşan

Citation: BMC Neuroscience 2008 9(Suppl 1):P128

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Neural representations of visual salience in primary visual cortex

Authors: Jit Hon Bong, Shih-Cheng Yen, Rodrigo F Salazar and Charles M Gray

Citation: BMC Neuroscience 2008 9(Suppl 1):P129

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Seventeenth Annual Computational Neuroscience Meeting: CNS*2008

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